Learning Outcomes: 1. Recall and state the formal definitions of the mathematical objects and their properties in systems biology (e.g., reaction networks, reaction rate equations, mass-action kinetics models, detailed balanced and complex balanced systems, Lyapunov functions, etc.).
Audience: Both Grad & Undergrad

2. Use such definitions to argue that a mathematical object does or does not have the condition of being a particular type or having a particular property (e.g., reversible, weakly reversible, mass-action, detailed balanced, complex balanced, globally stable, oscillatory, persistent, permanent, etc.).
Audience: Both Grad & Undergrad

3. Recall and state the standard theorems of the field (e.g., the Horn-Jackson theorem, the deficiency zero theorem, theorems on characterization of mass-action systems, theorems on persistence and permanence, theorems on dynamical equivalence, etc.) and recall the arguments for these theorems and the underlying logic of their proofs.
Audience: Both Grad & Undergrad

4. Construct mathematical arguments related to the above definitions, properties, and theorems, including the construction of examples and counterexamples.
Audience: Both Grad & Undergrad

5. Convey arguments using English and appropriate mathematical terminology, notation and grammar.
Audience: Both Grad & Undergrad

6. Model real biological systems by means of systems of differential equations, and be able to use software (such as Matlab) for visualization of their dynamics. Example models could include: (i) Enzymes, substrates and saturating kinetics, (ii) Glycolytic oscillations, (iii) Cell cycle control, budding yeast cell cycle models, (iv) Activator-inhibitor and positive feedback systems.
Audience: Both Grad & Undergrad

7. Identify applications of course content in current areas of research.
Audience: Graduate

Learning Outcomes: 1. Demonstrate proficient use of PyMol software for visualizing 3D structures.
Audience: Both Grad & Undergrad

2. Evaluate the quality of published structural models for biological macromolecules.
Audience: Both Grad & Undergrad

3. Identify common themes in structural biology which are used when addressing structural biology research questions.
Audience: Both Grad & Undergrad

4. Design and deliver a presentation to communicate scientific results to an audience of their peers.
Audience: Graduate

Learning Outcomes: 1. Apply, analyze, or evaluate advanced theories, concepts, or methods in biomolecular chemistry.
Audience: Both Grad & Undergrad

2. Explore a new phenomenon or modality in the biomolecular chemistry area and apply the knowledge gained to research in the field.
Audience: Graduate

Learning Outcomes: 1. Apply concepts learned in coursework to real life situations
Audience: Undergraduate

2. Read and effectively search scientific literature
Audience: Undergraduate

3. Develop critical, analytical, and independent thinking skills
Audience: Undergraduate

Learning Outcomes: 1. Describe the strengths and weaknesses of several biophysical methods and use that knowledge to design biophysical experiments for their research.
Audience: Graduate

2. Explain the fundamentals of thermodynamics, kinetics, and fluorescence and practically apply this knowledge to modern research problems.
Audience: Graduate

3. Use data interpretation skills to interpret results from several biophysical instruments.
Audience: Graduate

4. Integrate their knowledge of biophysical methods in the form of an experimental plan within a grant application.
Audience: Graduate

Learning Outcomes: 1. Evaluate and apply fundamental concepts and best practices in bioscience research conduct and research ethics
Audience: Graduate

2. Identify and meet individual and professional responsibilities and obligations to society
Audience: Graduate

3. Explore and implement activities for professional skills development and career management
Audience: Graduate

Learning Outcomes: 1. Develop critical thinking skills required to design and interpret an experiment in molecular and/or cellular biology
Audience: Graduate

2. Develop the writing skills relevant to preparing a grant proposal
Audience: Graduate

3. Gain insight into how the scientific method is applied in molecular and cellular biology
Audience: Graduate

4. Develop an ability to critically evaluate research literature
Audience: Graduate

Learning Outcomes: 1. Gain exposure to a variety of relevant research topics, potentially leading to cross-disciplinary, collaborative research opportunities
Audience: Graduate

2. Identify principles and best practice for preparing and presenting a seminar
Audience: Graduate

3. Gain experience in evaluating and critiquing research presentations in light of those principles and best practices
Audience: Graduate

Learning Outcomes: 1. Develop an understanding of current research questions in the field of RNA biology
Audience: Graduate

2. Become familiar with the approaches used to study RNA and its interactions with proteins
Audience: Graduate

3. Build a professional network with other RNA biologists on campus
Audience: Graduate

4. Develop techniques for presenting complex concepts to a diverse audience
Audience: Graduate

Learning Outcomes: 1. Exhibit a broad understanding of general biochemical principles.
Audience: Graduate

2. Conduct independent research using a variety of approaches.
Audience: Graduate

3. Think critically to address research challenges.
Audience: Graduate

4. Exhibit and foster professional and ethical conduct in their research.
Audience: Graduate

5. Collaborate with other investigators within or outside the thesis lab.
Audience: Graduate